The incident had the potential to hinder Juventus, but to their credit Allegri's side continued about their business as they went in search of a much-needed goal.
The odds were stacked against the Bianconeri, who trailed 2-0 from the first leg, but were rampant in front of their own fans as Ronaldo scored all three to secure a 3-0 victory to qualify 3-2 on aggregate.
The Italian giants were 2-0 down heading into the second leg of their round of 16 tie against Atletico on Tuesday, leaving them with the hard task of mounting a big comeback. I wanted to us play like that also in the first leg, but then I changed something and it didn't go the right way. "That is the sort of mentality you need to win the Champions League".
Atletico, who had not conceded a goal in their previous four Champions League games, packed their defence believing they could shut Ronaldo out again.
"The lads have shown great maturity", said Juventus coach Massimiliano Allegri.
The Champions League's record scorer took his tally in the tournament to 124, with four goals this season.More news: GOP senators appear ready to block Trump border declaration
The Portugal worldwide was signed by Juve for £100million last summer and a serious tilt at the Champions League was part of the reason that he moved to the club.
Atletico had an early scare when Juventus skipper Giorgio Chiellini, making his 500th Juve appearance, had the ball in the back of the net after four minutes. A move he began from his own half with a pass to Leonardo Spinazzola down the left.
Meanwhile, Ronaldo said he also hopes to play a role in European champion's Portugal's up coming matches having not played since the beginning of the season.
Teenager Moise Kean missed a chance to put Juve ahead just after coming off the bench, sending wide with only the goalkeeper to beat. Juventus were awarded a penalty when Bernardeschi was pushed by Correa inside the area, and the 34-year-old stepped up to dispatch the penalty into the bottom corner.
Maradona stated this after the magical Juventus star fulfilled his pre-match prediction by scoring a hat-trick against Spanish side, Atletico Madrid.
"I don't think it was lack of commitment or lack of character", Simeone said.